In-socket Fpga Implementation of Bioinformatic Algorithms Using the Intel Aal
نویسندگان
چکیده
We demonstrate the implementation of two important bioinformatic algorithms in the XtremeData XD2000i FSB module using the Intel Accelerator Abstraction Layer (AAL). We have modified SSEARCH35 and NCBI BLAST, industry standard open-source implementations of the Smith-Waterman and BLAST algorithms respectively, to transparently introduce a hardware accelerated option to users.
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